Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10190080 chr2:24355569 A/G 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs10190141 chr2:209965963 G/C 1.38E-9 177 19.87 24.1 26.57 KM Plot
PCPG rs10194004 chr2:24291080 A/G 0.000113 177 25.4 27.52 17.43 KM Plot
PCPG rs10194297 chr2:107257511 G/A 0.000336 172 26.57 21.95 25.87 KM Plot
PCPG rs10195955 chr2:24343474 G/A 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10195984 chr2:24343556 G/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10196728 chr2:24327484 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10196927 chr2:24336467 C/G 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs10199711 chr2:107227131 A/C 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs10199985 chr2:24337332 C/A 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs10200175 chr2:24358787 A/C 0.000167 171 25.17 26.92 17.43 KM Plot
PCPG rs10200481 chr2:24337861 C/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10201331 chr2:24323885 A/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10201535 chr2:242517966 G/A 4.6E-5 177 25.87 29.57 19.75 KM Plot
PCPG rs10202119 chr2:118536277 G/A 1.73E-5 177 25.08 25.97 11.65 KM Plot